YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PER1_SCHPO
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.96
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	26	0.94
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	95	0.99
Transmembrane Helix	96	119	0.82
Cytoplasmic	120	139	0.85
Transmembrane Helix	140	160	0.92
Non-Cytoplasmic	161	170	0.88
Transmembrane Helix	171	190	0.95
Cytoplasmic	191	199	0.84
Transmembrane Helix	200	220	0.95
Non-Cytoplasmic	221	230	0.76
Transmembrane Helix	231	249	0.86
Cytoplasmic	250	257	0.82
Transmembrane Helix	258	279	0.83
Non-Cytoplasmic	280	290	0.70
Transmembrane Helix	291	310	0.68
Cytoplasmic	311	331	0.77

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVLRNFTIF FLFTALSLFR QISASAGDLH PVYVSCVNRC IENKCHGNPS DTSKLPLDLK  60
   61 LFRWDCGSNC GYECEITAEN YFAAHNLPSQ QYHGKWYFIR VFGIQELFSV FFSMLNFMIH 120
  121 YNGYHIMRRC IPDEHPAKRL CLSWAIVGMN AWVWSSVFHI RDTPITEKLD YFSAGAFVLF 180
  181 GSYCTLILML RLDQLPGGKL LCWIIGVIFI AAFIAHVSYL SFYSFDYGYN MKANVAVGLV 240
  241 QNILWYYYSW SNRNSGLYWT RWPAYIVTSL MLATSLELFD FSPIANLIDA HALWHLSTVP 300
  301 ITHYLYGFVV RKCSYDLTKG TFKIKAYDSS R