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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SPAC521.04c
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.62
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQPADINQS ESSAETITQG RRADRPEETP SSSVYEQNLR FGDFLMPTVG DADATDSLSQ  60
   61 STNDRDIYSP REIDQYTRKV SSRTDPSTST ISNARQHPRN SVSRLSRSSS NVRQQRDIPK 120
  121 QNFKVRPLSP LRGQSPASLR SEESFTLKER QNAINKTRAF GMRLWKPALY KKFRSINRDA 180
  181 DIDIHDEPLK RPNTSISNVI WLICFGAPLF LVIFICYIFF TVLSFFNVPD AIVYSKLCRG 240
  241 LMFYLLYPFG QHVRHKVKRL SVRSPAHPIY QTQHSHYDET PTSHHPDPAR LNFLSFSFCV 300
  301 NPMNQSLDCN TTPHRRNASS IIYTLMYYLI IAPTLLITSA ICMFTIFFVP CARTLWAICR 360
  361 HLRTCPLSLS FRPNLALPLS MDSSDVVLLC VKKAASWKYY KYTIDGIYII YFDMLALIIP 420
  421 TIFFGFFGSQ GHWFTSSVFL FTASLVSIIP LAYFIGMAVA SISAQSSMGM GAFINAFFGS 480
  481 VIEVFLYSVA LRKGNAGLVE GSVIGSILAG LLLMPGLSMC AGAIRKKFQF FNIKSAGATS 540
  541 TMLLFAVLGA FAPTMLFRIY GPFRLDCEPC GANCQKCTKH YVLENDSLYK NRVLPFTYCC 600
  601 SIMLVLAYAI GLWFTLRTHA SHIWQNFTAD DISFLKAEEE VGEPVNQDTA GNMSDSSEGG 660
  661 EAVVNGNSQH HHNRDDASSG LSSNGSENES LEHEPTNELP QRPLVNQSQN SHGDDAPNWS 720
  721 RSKSAIILLS ATFLYSLIAE ILVEHVDTVL DKFAISEKFL GLTLFALVPN TTEFMNAISF 780
  781 ALNENIALSM EIGSAYALQV CLLQIPCLMG YSLFQYYRSG DSISFKHLFT MVFPTWDMIC 840
  841 VMICVFLLTY VHSEGKSNYF KGSILVLAYL VSMLGFTFFN Y

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle