YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	pvg1
Protein type:	Globular with Signal Peptide
Type Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFANINIRKS VWLFLLAAVS CTLFIYGVTR TDLQTLKNPS SLTSPSSSTS VDKKKPLFTK  60
   61 SPRNSASCES TITLQSNLLF TYYKHYFAGI KKVALIGFPD HPNKGDSAIY VAEKKLLDAL 120
  121 NIEVVYITAQ EADYSASELK SIISDIPRDE FALAFHGGGN FGDLYPDHQH LRELVVRDFP 180
  181 SFTTISFPQS VWYNEQQLLE QASILYAENP NITLVTRDRQ SYGFAVDAFG KHNEVLLTPD 240
  241 IVFFMGPIPE IREATPITHD VLILARLDHE GGQQHGAEDY YRDTLNAANL TYSVEDWLLW 300
  301 DPPVAQNPDS SFDDRGQARY EAGAEFLASA RVVITDRLHA HILSTLMGIP HIVVENSQMG 360
  361 KITNYHNTWL HGCTLDGVSV VVDSVDKALS LLLEWNEAGY F

Type	Start	End	Confidence
Signal Peptide	1	27	0.70
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	401	0.99