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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: pdr1
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.53
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEQEKGKGD LDDPNSKNTK CPDKFEQKVE EYLEVLNELH LTGRTSGFCM RNFTVEGAFN  60
   61 PKFQIRSFFA QLLHPINIIF RTGPKRDIIP LVKGFDGYLQ PGSSLLVLGH EGSGGSTLLK 120
  121 ALCGIVEENE RLNGSLHYDG LDYKIAHSQF KADLSYCGEG HSKVATITVR RLLEFVCSCR 180
  181 LPASKYDHPR SHYIRRICEI IRDAFDLGDF YNHRILRVFN SGDQIKVDVA QTMCARPLIQ 240
  241 CWDNNMRDFD SISVIDILSR IKVLSHKLGT TLVAIVSQAS DRIFHMFDMV TLMYEGEQIF 300
  301 YGPTSRLKPY FLDLGFIPAK HSTTVEFVTS LTYPEMRIIN KKHQGFIPST PAEFRECWLR 360
  361 SEDYAKLIKF MDRYEENHSD IHAFKDAKFD QTRLQKFLRW LNSNPCLIPY RLQVFATAKV 420
  421 TFFQYLHDYS YIATFVFTYV FQALMLGSLF YNLRNESSEL YSRGSVLSNA IVFTAIQTMS 480
  481 EVDIIFLKKS LFKEHRVQSL YHPSAALMGS SLVEFPMRIV VVTMYDIIVY FLSDLKRNAR 540
  541 SFFIFYLFTI VITFCMSAVF RFIALLSTTA EIAALIGGIG ALVLIIFCGA VMPVQYIGWW 600
  601 FRWIAYANPV NYGYESIMLN EFDGREIPCS LMAPAPDTAP IENNFCLATA GRTGTSIVSG 660
  661 YQYLQVVYQY KADFLWRNCG IILGFAIFIL ASSLILANFI RYDRESVHIP EFQKRKSYSQ 720
  721 VASSFLIEPQ DKPPSQTEPD NKKVDVSTTL STNDNLVLCW RDLNFTVVTK TSKKQILTNV 780
  781 SGYLKKNTLT ALLGENKSGK SVLLRILSQR GIAGSVEGEI TLSGLKNPKN LRKRIGYVRK 840
  841 NPLFISEYTV RETLRLHAAL RQSKQRSLSE QYAYVEYVID FLGLGEVADF IVGDMGKGLS 900
  901 LYHKRLLSIA VELSARPGSI LLLDEPANGL DSQSAWMLVC ILQKLARSGL SILCSVSQPS 960
  961 SRILELFDMM LILDLNGNTV YYDTMGRDLS KLVNYFKRIH GTNEHSKDTA DFVLHCIQFL1020
 1021 KQGPEFDYAG AWASTNTHKQ IIEHVNFIMD NPELTDDDFP NETRFMTSFF FQIYKISMRN1080
 1081 FVAYWRDSSL LRARVAFNIV AGLIIGFSFY KQGVGVEETQ NKMFSAYMLT VASTSTMNGL1140
 1141 QPKFIYFRSI YEQYEQNTAI YSRTAFIIAF FLVEAVINCC FATLFFFGWY YPSGFYEFNH1200
 1201 NIPFYGGFAW LMLMIFTLYY TTLGIGIATI SPSIGTASII SGTAFVFIQY FNGMIQLPGV1260
 1261 IVGFWKWMDA LSPYKYFLEG MIGGVLHDAP ITCEKFEIHY VDPPPNYSCG EYFSSFLNSS1320
 1321 GHGIVYNPEA YSSCQYCPYK NADELMVGFG YHYNHKWRNF CIMIGYTAFN LGAAIALYYI1380
 1381 IHKTPWKRLA ARFVPD

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle