YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gpi10
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIWFWLAIL VFRWWNALWV KTFFQPDEFY QSLEVAHHFI FRYGFLTWEW TSAIRSALHP  60
   61 LIFAALYRVL QVLKLDSSYF VFTNAPKLLQ GTFAAILDYG TYKFALVRYG SKTANWTLAC 120
  121 SLVSIMNAYV GVRTFSNSLE TTLTSIGFYY FSYYLKYENS SPEQRKKAYS SLLGFISVAA 180
  181 FACFIRPTNI LVWIFPLLFW NKNPQTPIKD LLSFSNVFNR FRFLYALGYG RLFGIFVLCV 240
  241 SLFLVNIIAD RILYGRFVFP IISFFQFNVT SGLSSLYGLN AWHYYLSQAL PLICGGFLPF 300
  301 VLLTMDLQTA GTILCVFFPY SLIGHKELRF VYPISPILLT LAGKFFSSFS SWKRAARFFF 360
  361 LIGLGHALVI TFLCRFHQFG VMEVMPLIHS LAEKNQTGLI LAPCHTTPWQ SHIHSPFAEN 420
  421 GWKFLTCEPF EKPFDETDRF YENMPTFLDK IKEWPDYLIF FEERFYSLYS YLDSRGLKYE 480
  481 EVQRYYNSLI PESRERAGAL LVYKKL

Type	Start	End	Confidence
Cytoplasmic	1	4	0.75
Transmembrane Helix	5	23	0.61
Non-Cytoplasmic	24	50	0.58
Transmembrane Helix	51	70	0.62
Cytoplasmic	71	170	0.63
Transmembrane Helix	171	190	0.93
Non-Cytoplasmic	191	226	0.86
Transmembrane Helix	227	248	0.90
Cytoplasmic	249	256	0.76
Transmembrane Helix	257	279	0.85
Non-Cytoplasmic	280	295	0.66
Transmembrane Helix	296	320	0.77
Cytoplasmic	321	329	0.74
Transmembrane Helix	330	348	0.83
Non-Cytoplasmic	349	354	0.70
Transmembrane Helix	355	377	0.88
Cytoplasmic	378	506	0.82