YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	cox18
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQTLIGVHS YMPWCYEIPA MAIFLRSTIT LPIAIASLKT ARRFVQVQPL IKEAKKRCRT  60
   61 NTDFRTVRKK LYKRFNCHPL MIYALPITQL PLFAFASYQL RQAVDVCPES MSTEGMLWFT 120
  121 DLTLPDPHGV LPAVLAVTYL TNMSILKRPS DSRLLKIFNT AGIMSAFFVS FMAFKTSTAL 180
  181 SLYWTTSAIY SLVQNVALRK LL

Type	Start	End	Confidence
Non-Cytoplasmic	1	17	0.76
Transmembrane Helix	18	38	0.76
Cytoplasmic	39	74	0.96
Transmembrane Helix	75	96	0.87
Non-Cytoplasmic	97	126	0.88
Transmembrane Helix	127	146	0.88
Cytoplasmic	147	154	0.90
Transmembrane Helix	155	174	0.91
Non-Cytoplasmic	175	179	0.68
Transmembrane Helix	180	198	0.54
Cytoplasmic	199	202	0.48