YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPCP1E11.05c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	58	0.85
Transmembrane Helix	59	81	0.89
Non-Cytoplasmic	82	135	0.71
Transmembrane Helix	136	155	0.90
Cytoplasmic	156	163	0.60
Transmembrane Helix	164	184	0.70
Non-Cytoplasmic	185	233	0.72
Transmembrane Helix	234	254	0.47
Cytoplasmic	255	261	0.68
Transmembrane Helix	262	282	0.90
Non-Cytoplasmic	283	315	0.67
Transmembrane Helix	316	337	0.89
Cytoplasmic	338	389	0.65
Transmembrane Helix	390	404	0.50
Non-Cytoplasmic	405	405	0.15
Transmembrane Helix	406	420	0.53
Cytoplasmic	421	447	0.69
Transmembrane Helix	448	471	0.90
Non-Cytoplasmic	472	472	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIAATPAKSK PSDVNLEQTF KGVSETSKID LRRSRAAYRP LELSPTPSIF ARNYQRNAVD  60
   61 FTGFFVLFWV AVSIMIFMSF LENFELTGRP VVGTIFKYFQ SNLLDLAKAD LAMSSMFLLA 120
  121 FPFQKIFALG YLRWYGLGVY LYSILILLFL SHCVLRCCLS NWSWTHRAMF ILHSMVILMK 180
  181 LHSYNVVNGW YSYCYHSLNK LQSKKTDLDD DERSSVEFYE HCLNHHGNTY PENLTIPNAL 240
  241 DFLFMPSLCY QLYYPRTAHV RIHYLIECAL GTFGCIFLLV IISDHFMVPV LAKAIRTIIE 300
  301 APEDASATYF AIRLGHTVAF LMFPFMLSFL LVFWVIFEGV CNFSAEITRF ADRNFYDDWW 360
  361 NCWTWDQFAR TWNKPVHYFL LRHVYVPLNS FMSKSLSTFF TFFVSSVLHE LVMGCITLKI 420
  421 RGYGLFFQMT QIPYIIIQRQ KFVRRHRLLG NIAFWFSIII GIALIAALYI LF