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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PPK4_SCHPO
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.98
Topology Confidence: 0.47
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSLKGRLLF LRKFVFFSLL ILLFAHGASS SSSSFNYFDK RTNGKANNEL ALFSPTADSP  60
   61 SSVDGVLELP SAENVFAESS LYNAFIVATV DGSLHSYDRI TGQELWSLFT NANPGLSYTK 120
  121 DENSLLSSKF LSQSNFKSYN STHGEFYSDS TLNISYLSDD DTVWFVEPID GGILYAFNLQ 180
  181 TGLVRLPHSI KDLVHASPIR LLNNNVFVGS KNTTLFTIDV SNGDIVSQYP SGHRYETHHS 240
  241 VHNLGTKRDS VPSGADSDLS FKDPSGKKLS ESLDLLDDFN YQVTVSNKSF VDIARTEYFI 300
  301 TIYSDSNVIL DLVYIDWTPT KNEIMYESFH SSSFDSKLAL SSYDSSLHIV DTHSKFIKQN 360
  361 IPLMSPAATV FDIVTLPHNK KIDKSQTPAK FPTSVLLRQP IDTYLETMFP QIARNKTEHV 420
  421 YINHIGNAWF AMSERHYPLV SLAPEASFLY YNGFYIPLNS IFGLHSLMAT PKPFFALPGL 480
  481 PGYDIPSYVE SEGSTKTLPS IGKKPIPLLD PNPISSTPIS ITFWVIMFLS VSFTIVTFFS 540
  541 ILRIRSSEVR PLKSQKNTVS INNKIDTSKR RRKGKRRKRV SDEHSASSNF NEIESQASFE 600
  601 QNQTLDILSE NIVEIQDKST DPLQKSLDSS LKSHLPEATV IQNTDGSVTV NSLTVYPEVI 660
  661 GYGSHGTIVY RGVYEDREVA VKRVLMEFYD LASREITLLQ QSDNHPNIVR YYCKQKSDQF 720
  721 LYIVIELCKC NLSDLIEKPI AYDDLFKSID LVSLLYQIAF GVSHLHSLDL VHRDLKPQNI 780
  781 LLVVNNSPNL SKTRVRALIS DFGLSKKLDF NQSSLRNTTF EAAGSYGWRS PEILSGSLSQ 840
  841 QSKEIQVKTR EGRIRQASHA TDIFALGCIF YYTLTGGMHP FGSHYDCEGN ILKGNYCLVH 900
  901 LQSLGECGVL AADLIEDMIA FEPSKRPTIE VVLNHPLFWD YAKKLDFLID VSDRFEVEER 960
  961 DPPSPLLQML ENNSKSVIGE NWTTCLHSSL VDNLGKYRKY DGSKILDILR VLRNKRHHYQ1020
 1021 DLPESVRRVL GDLPDGFTSY FVEKFPMLLL HCYHLVKDVL YEESQFKRYL EY

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle