YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC2E1P5.03
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.97
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRIFILLLL FGVCLAWTSS DLEIFRVVDS LKSILKNKAT FYELLEVPTK ASIKEINRAY  60
   61 RKKSILYHPD KNPKSKELYT LLGLIVNILR NTETRKRYDY FLKNGFPRWK GTGYLYSRYR 120
  121 PGLGAVLVLL FLLISIAHFV MLVISSKRQK KIMQDHIDIA RQHESYATSA RGSKRIVQVP 180
  181 GGRRIYTVDS ITGQVCILDP SSNIEYLVSP DSVASVKISD TFFYRLPRFI VWNAFGRWFA 240
  241 RAPASSEDTD SDGQMEDEEK SDSVHKSSFS SPSKKEASIK AGKRRMKRRA NRIPLSKNTN 300
  301 REN

Type	Start	End	Confidence
Signal Peptide	1	20	0.96
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	121	0.99
Transmembrane Helix	122	144	0.90
Cytoplasmic	145	303	0.96