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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SPCC4B3.03c
Protein type: Transmembrane
Type Confidence: 0.97
Topology Confidence: 0.88
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLLRIRKAS LYGFSTVFIL LQSYAVAYPL RAFRQNDGIG IAMNPSQDGG FVSAEKDSDF  60
   61 EYWMKLIISA VLILLGGVFA GLTIGLMGCD DLHLQVLEQS GDASERVHAR KVLKLLRRGK 120
  121 HWVLVTLLLG NVIVNETLPI VFDSIIGGGW PAVLISTAMI VIFGEVIPQA TCVRYGLSIG 180
  181 AKLEPIVLFM MYLLWPIAYP TALILDACLG ESQSTMYKKS GLKTLVTLHR DLGIDKLNQD 240
  241 EVTIITAVLD LREKHAESIM TPIEDVFTLP MDRILDEDLI GEIICAGYSR IPVHKPGFPH 300
  301 DFIGMLLTKT LIGYDPDDKW PVGKFALATL PQTWPNTSCL DLLNYCQEGK SHMILISNSP 360
  361 GEPHGAIGVI TLEDIIEELI GEEIIDETDV YIDVHKGLPR VGENNDFWNR MLHRSHLSTM 420
  421 AALHKSQRSH DLAANEHAPI LNPKNSALNP RLVTNDRVKV KSPSLIQSST GYGSMSQSPS 480
  481 RSDLPSKISR VNAELQAHGS QRSSIDVSKE NKSSVADGPS SQAHNGPSTQ PPEALPNGTD 540
  541 PSSSKTTENN GNQQSERTES ADGKKDNSGS ISSNSSKTFT GKRVRLGNVI ESNVVSPDGT 600
  601 NRIVIEPFER SVDPNNADIV EMVERNGIVV PKVTVTSHED DVDSVHNTPM SVSSTLSVKT 660
  661 SSSKVPRNKR KRRKGKSKK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle