YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC1289.13c
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRWYSYVIPA VILSIIAISG VWWNATLGTR LDQKVQLFLN EHSSILNAVY ETTTIVYTEP  60
   61 LHTSVSETIT STSFVTETTT VTPTVTATAQ ELSTLNPHPE NSKIVLLMGS NAQNDPSSPL 120
  121 NPYIRTIIKN RRDYAERHGF KFEFLDLDEY KPSIGDKPAP WAKIPMIKNV IRKYPDAEWV 180
  181 WWLDHDALIM NRDLNLVDHI LKHEKLNSLL LRDTEYFSGF GIDSEGFRTP KNQDPDDIHF 240
  241 IIAQDFNGIN AGSFLIRNSE VGTWMLDFWN EPLYKEHNGV FVEQQALSHM IYSHPIVHKH 300
  301 VGLVTLRSIN AYDSSDPAWG YEDGDLCVHF AGCFVFQTCA QNFEKYGKII TEKQGHDWFD 360
  361 PSEKEYIEQR LFPQP

Type	Start	End	Confidence
Cytoplasmic	1	6	0.65
Transmembrane Helix	7	26	0.84
Non-Cytoplasmic	27	375	0.88