YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	alg5
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVYIVLYTC LAGFILLFLV YYYLTHSHCP RKQLEGEETC VFIENGQKKS LTLEKWSTSD  60
   61 NIQITVIVPA YNESKRIGNM LQETVDHLEK YYRSSSSAGQ RRWEILIVDD ESKDTTVNAV 120
  121 LEFSNKLDLR DHLRVCSLKR NRGKGGAVTW GMLYARGQYA IFADADGASQ FSDLELLFKN 180
  181 MPPGPRGGVV VGSRAHMVNT AAVVKRSFIR NFLMHCFHKL LQILGIREIG DTQCGFKLFS 240
  241 REAYQSIFPR MHVEGWIFDI EVLTLARFFG LPIIEVPITW HEVGGSKMTL LKDSISMAID 300
  301 LLVIRLNYTF GIWERPSAKR IT

Type	Start	End	Confidence
Cytoplasmic	1	4	0.41
Transmembrane Helix	5	25	0.89
Non-Cytoplasmic	26	322	0.53