YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC2G5.04c
Protein type:	Transmembrane
Type Confidence:	0.69
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRSRVPANI RAFDAFPKFS KEYRRQSSSR GGFFTILLSV LIVVLVFSQC VQYIRGIREQ  60
   61 ELFIYDSVSE LMDLNIDITI AMPCSNLRID VVDRTKDLVL ATEALTLEEA FIKDMPTSST 120
  121 IYKNDRYAGL RWARTEKFRK KNNAEPGSGT ACRIYGQLVV NRVNGQLHIT APGWGYGRSN 180
  181 IPFHSLNFTH YIEELSFGEY YPALVNALDG HYGHANDHPF AFQYYLSVLP TSYKSSFRSF 240
  241 ETNQYSLTEN SVVRQLGFGS LPPGIFIDYD LEPLAVRVVD KHPNVASTLL RILAISGGLI 300
  301 TVASWIERVY SSRAHRSTSE ADMLGLLGKS ETE

Type	Start	End	Confidence
Cytoplasmic	1	30	0.65
Transmembrane Helix	31	51	0.63
Non-Cytoplasmic	52	333	0.93