YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPCC970.03
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKQTLLSTP LHGVYIPVFL IIFGTYIVKR EWVGYAIVVA FSLGFHKFWR GRVRKVLSDK  60
   61 IQQFELSDKA VLNHNTAIYR FRLPRANDVL GLPIGQHLKV FVDVDGKEYS RSYTPLSSDA 120
  121 DKGYFDLLVK SYPNGKVSKK FSELKIGDTI GVRGPKGNWK HRTGLARHFG MIAGGTGITP 180
  181 MLQIIRAVLS NFEDPTEITL LYANVSEGDI VLRDEIDALA KKDPRFTVHY VLNNPPENWK 240
  241 GSVGFVTQEL IKAHFPAPSP ETKVLICGPT PMVNSLREAT VALGYEKSRA ISKLEDQVFV 300
  301 F

Type	Start	End	Confidence
Cytoplasmic	1	7	0.86
Transmembrane Helix	8	27	0.90
Non-Cytoplasmic	28	31	0.84
Transmembrane Helix	32	50	0.90
Cytoplasmic	51	164	0.98
Transmembrane Helix	165	185	0.78
Non-Cytoplasmic	186	301	0.86