YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YG06_SCHPO
Protein type:	Transmembrane
Type Confidence:	0.83
Topology Confidence:	0.33
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKDLENEIY KSRKNLNNIL VLFDYIDLSN HSIDEVNDAA AALCRVYCYL SRNGLLKRPK  60
   61 EDDSSANAQV KNWVCDNYIN YTEKLTEIFS MANVEALQVS FLTMTMRLCK AESQMDENGT 120
  121 FRNQFYIRFC LELLSSSQLS DICIKDFVTS YLVPYDDVRF FFYKNSKKVI SSLIESSKTD 180
  181 DPMANLDIVA FNTIRILSAI PSPLPSSSTS SWADEPSPSS TETSSIKRAF QESWLSALSL 240
  241 PLSVNLYKQV LNVIHKRVIP FLQKPNLLMD FLTDAYNSHH AVSLLALNGL FTLMISHNLD 300
  301 YPLFYPKLYA LLDRNLLYLK TRSRFFRLLD LFLSSTHLPA TLIASFIKRL ARLALTAPPG 360
  361 AIAIVIPFIY NCLQRHPTCM QMLHRSSAES GDSFDFDQPD PLLTGAIESS LWELSTLQNH 420
  421 YYSNIASLAS IMSQKFTKPR YELEDFLDHG YATMCDAELR RPLKNEPPIE FEKRTLASGL 480
  481 EKSWI

Type	Start	End	Confidence
Non-Cytoplasmic	1	280	0.56
Transmembrane Helix	281	295	0.33
Cytoplasmic	296	324	0.55
Transmembrane Helix	325	347	0.59
Non-Cytoplasmic	348	353	0.68
Transmembrane Helix	354	373	0.73
Cytoplasmic	374	485	0.67