YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC212.04c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNPESLKKQ VEPPGYNELF MVEDVCNVDL EQGLDLCKPE KVNKQSQRSR QSRQSLFTNT  60
   61 IKPQKDKMNI KTNKIKEFLN DLFTEFSKFH NSYYPNGRIS TQDKSRWVLL IIWSIITILT 120
  121 IDKKFKIKES YLEWIGENQS HSEIWGPIVI YVGLFILLLS AFNYCSKLII KALPLISMVI 180
  181 AWVGVVIAAF SVIITATIAG VIAAFSVIIT ATIAGVIAAM VGILYFGHWL VYKILILAFG 240
  241 FKIVTSGDVC VSNTLPTHNG ETALHSDATV GSDIEQIELQ NMPTPVKK

Type	Start	End	Confidence
Cytoplasmic	1	106	0.88
Transmembrane Helix	107	125	0.81
Non-Cytoplasmic	126	143	0.94
Transmembrane Helix	144	165	0.92
Cytoplasmic	166	177	0.73
Transmembrane Helix	178	199	0.90
Non-Cytoplasmic	200	206	0.56
Transmembrane Helix	207	232	0.84
Cytoplasmic	233	288	0.90