YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YBH4_SCHPO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	401	0.69
Transmembrane Helix	402	426	0.84
Cytoplasmic	427	433	0.63
Transmembrane Helix	434	459	0.76
Non-Cytoplasmic	460	492	0.63
Transmembrane Helix	493	514	0.85
Cytoplasmic	515	531	0.66
Transmembrane Helix	532	557	0.80
Non-Cytoplasmic	558	572	0.58
Transmembrane Helix	573	595	0.82
Cytoplasmic	596	614	0.49
Transmembrane Helix	615	636	0.93
Non-Cytoplasmic	637	655	0.54
Transmembrane Helix	656	676	0.92
Cytoplasmic	677	682	0.55
Transmembrane Helix	683	705	0.90
Non-Cytoplasmic	706	711	0.54
Transmembrane Helix	712	736	0.83
Cytoplasmic	737	752	0.49
Transmembrane Helix	753	780	0.82
Non-Cytoplasmic	781	796	0.53
Transmembrane Helix	797	818	0.91
Cytoplasmic	819	838	0.51
Transmembrane Helix	839	862	0.86
Non-Cytoplasmic	863	867	0.50

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFSHSLQFN AVPEWSESYI AYSNLKKLIY SLEHEQITLQ QGAPDEETRL LEHERRSPDD  60
   61 RFMFALDKEL QGIVEFYAPK EKEIADQYGR IKGEFETYEN EYMSQGNNIN YPTPERLQKS 120
  121 SASRKSGRMA RSQELPRITS SNREIYLNGQ TSDGGYAAPA ISRAESTAIQ PSEPHDVDTS 180
  181 KNGLSKKQHS EAQPEVQGND DEVEEEDDDD DDEDEDEDED EDNNNNNRWL LIEQYPSDIV 240
  241 AYENFVSLKR KLTQLYVSIH DLISYVHLNY TGFSKILKKY DKTLGSSLRE SYMKRVNQAY 300
  301 PFLPATGKTL SKRLNIVAEW YAKLCCQGDT FVAIRRLRGH LREYVAWERN TIWREMMAME 360
  361 RRTQAARLSG LKPVAADEKE SEQPPYFTIK TKFGVFRIPR CFFNSTIATL ITIIVIFILL 420
  421 LSFPVIDNRE QNNCLALLVM VSLLWATEAI PLFVTSFLVP FMTVFLKILR DENGSPLSGK 480
  481 ESTKVIFSSM WNPTIVLLLG GFTIAAALSK YHIAKRLATS ILAHAGRKPR SVLLTNMFVA 540
  541 MFASMWISNV AAPVLCFSII QPLLRNLPAE SDFAKILIVG IALASNVGGI ASPISSPQNI 600
  601 VALQNMDPAA GWGEWFAVSI PVSLLCIFSI WFLLSFGLLK DEHITLAKIR STKDTFTGVQ 660
  661 WFISIVTIGT IVLWCLERRF DEVFGDMGVI ALVPIIVFFG TGLLTKEDFN NFLWTVIVLA 720
  721 MGGVALGKVV SSSGLLELIA LKIGNAVSSL NTFRVLLIFS ALTLVVSSFI SHIVAAMVVL 780
  781 PIVHEVGSRL ADPHPRLFVL ASGMMCSLAM ALPTSGFPNM TAIMMENEAG KRYLKVSDFL 840
  841 KAGIPATLIS FVILLLIGTP IMRALGF