YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YG75_SCHPO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDHLEFDENT DSEYSIFEED NDYGLHGLDD SVGFTDLFDA PNIYRVYSWL HKHYNQKKGQ  60
   61 LKHGVSRQKN KLQPIHKQIN YETDKLKERL GKSIDKFQEQ WNSGKVVRFR DKLSFALGVS 120
  121 TCILTALLVG MAPESMHLWY TIQLFVYLPL RYYTYQRKGY EYFIADFCYW GNILLLVYIW 180
  181 IFPESRRLFI LSYSISYGTL AWSVVAWRNS LLFHSIDKIT SLFIHFFPPL VLHTIVHLTN 240
  241 KSYLKDRFPA VLKVKKIDLL SSVEIASFFY ALWQIWYYFF IQVGKQKQIQ EGRPTSFTWL 300
  301 SKASYSKTKL GRAVAKLPQN LQPFVFMIIQ YLYSITTMLP CSLWYNNKLY STAFLALIFG 360
  361 WSVWNGASYY IDVFGRRFQK ELEALRQQLA ETPTNSGSSS ALSR

Type	Start	End	Confidence
Cytoplasmic	1	112	0.99
Transmembrane Helix	113	133	0.91
Non-Cytoplasmic	134	161	0.79
Transmembrane Helix	162	182	0.94
Cytoplasmic	183	188	0.80
Transmembrane Helix	189	207	0.92
Non-Cytoplasmic	208	218	0.67
Transmembrane Helix	219	239	0.82
Cytoplasmic	240	256	0.81
Transmembrane Helix	257	277	0.71
Non-Cytoplasmic	278	323	0.68
Transmembrane Helix	324	345	0.63
Cytoplasmic	346	349	0.38
Transmembrane Helix	350	373	0.77
Non-Cytoplasmic	374	404	0.44