YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC15A10.06
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	33	0.95
Transmembrane Helix	34	54	0.94
Cytoplasmic	55	64	0.80
Transmembrane Helix	65	87	0.86
Non-Cytoplasmic	88	92	0.78
Transmembrane Helix	93	112	0.85
Cytoplasmic	113	124	0.75
Transmembrane Helix	125	148	0.91
Non-Cytoplasmic	149	162	0.73
Transmembrane Helix	163	182	0.76
Cytoplasmic	183	190	0.67
Transmembrane Helix	191	210	0.71
Non-Cytoplasmic	211	228	0.69
Transmembrane Helix	229	253	0.88
Cytoplasmic	254	262	0.68
Transmembrane Helix	263	280	0.84
Non-Cytoplasmic	281	285	0.70
Transmembrane Helix	286	305	0.90
Cytoplasmic	306	317	0.86
Transmembrane Helix	318	340	0.80
Non-Cytoplasmic	341	349	0.67
Transmembrane Helix	350	370	0.86
Cytoplasmic	371	390	0.83
Transmembrane Helix	391	414	0.85
Non-Cytoplasmic	415	420	0.82
Transmembrane Helix	421	442	0.89
Cytoplasmic	443	569	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPDSKHWVIL LFRRDGDDDD DDGQDPALQE LYSSWALFIL LVLLIGALLT SYYVQSKKIR  60
   61 AIHETVISVF VGMVVGLIIR VSPGLIIQNM VSFHSTYFFN VLLPPIILNS GYELHQSNFF 120
  121 RNIGTILTFA FAGTFISAVT LGVLVYIFSF LNFENLSMTF VEALSMGATL SATDPVTVLA 180
  181 IFNSYKVDQK LYTIIFGESI LNDAVAIVMF ETLQQFQGKT LHFFTLFSGI GIFIITFFIS 240
  241 LLIGVSIGLI TALLLKYSYL RRYPSIESCI ILLMAYTSYF FSNGCHMSGV VSLLFCGITL 300
  301 KHYAFFNMSY KAKLSTKYVF RVLAQLSENF IFIYLGMSLF TQVDLVYKPI FILITTVAVT 360
  361 ASRYMNVFPL SNLLNKFHRQ RNGNLIDHIP YSYQMMLFWA GLRGAVGVAL AAGFEGENAQ 420
  421 TLRATTLVVV VLTLIIFGGT TARMLEILHI ETGVAADVDS DTEIGMLPWQ QSPEFDLENS 480
  481 AMELSDASAE PVVVDQQFTT EHFDEGNIAP TLSKKVSSTF EQYQRAAGAF NQFFHSSRDD 540
  541 QAQWLTRFDE EVIKPVLLER DNLKNGTKK