YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC3A11.10c
Protein type:	Transmembrane
Type Confidence:	0.81
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSDSKLELP LPVNQQKPRR RRILKVHLLI AALILSAVGY LGKGKWIWTP ERKAHFVLTH  60
   61 FPLIDGHNDL PIYLRENYDN RLLNISLEHL PGQTDIFRLR QGHVGGQFWS VFVECPSLDS 120
  121 NSSLSWNRTG EYEAVTQTLQ QIDVVKRMAL YYPKTFSLTD HSGKVKFDFL RNHISSMMGI 180
  181 EGLHQIAGSP SILRQFYDLG VRYATLAHNC DNVFADAAVD GKRTNKGLSP AGRDIVREMN 240
  241 RLGMIVDLSH TTPETMHQAL DVSVAPAFFS HSSAKGVYDH PRNVPDDVLI RVKETDGVVM 300
  301 VNFYPAFISP HPENATIDTV VEHIMHIANV TGSYRHIGLG GDFDGIDMVP KGLEDVSKYP 360
  361 DLFVKLAERG LSITELADIA GRNVLRVWKT TEDLGHSIHE PPLEWEDDF

Type	Start	End	Confidence
Cytoplasmic	1	22	0.80
Transmembrane Helix	23	42	0.74
Non-Cytoplasmic	43	409	0.99