YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MUG16_SCHPO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRSFRNGFR LLKLSQMDFE RAWWDMANLF RAPRRVYRSI TLRKQNINRY GREDFSFIVL  60
   61 FSCMIVISAL LWALFYMNTP KGYVTTITFM LFVDFGAVGV IMATMYYFIA KRFLMKSNDT 120
  121 ILSSTDYQLE WNYCFDVHCN SFFPSFVLLY VIQLFLLPVI TRDNFISLFM GNTLYLVALC 180
  181 YYSYLTFIGY QILPFLKNTH ALLLPIPMFF IMWALSLLGF NVPKHVVDVY FGKSA

Type	Start	End	Confidence
Cytoplasmic	1	54	0.95
Transmembrane Helix	55	76	0.93
Non-Cytoplasmic	77	86	0.79
Transmembrane Helix	87	109	0.92
Cytoplasmic	110	138	0.88
Transmembrane Helix	139	160	0.72
Non-Cytoplasmic	161	167	0.64
Transmembrane Helix	168	190	0.82
Cytoplasmic	191	200	0.60
Transmembrane Helix	201	222	0.89
Non-Cytoplasmic	223	235	0.77