YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC215.11c
Protein type:	Globular with Signal Peptide
Type Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKTAASSAV DASQAGTVKV GDMVVNRMGF GAMRVTGDGI WDEPKDKEAC IATLKRLPEL  60
   61 NINFIDTADS YGPEVSENLL REALYPYKGL IIATKGGLVR TGPNEWHPCG APKFLRQEVL 120
  121 MSMRRLGVKQ IDLWQLHRID PKVPRKDQFS EIAAMKKEGL IRHVGLSEVT VDDIKEAEQY 180
  181 FPVVSVQNLF NLVNRKNEKV LEYCEQKGIA FIPWYPLASG ALAKPGTILD AVSKDLDRST 240
  241 SQIALSWVLQ RSPVMLPIPG TSKVDHLEEN VKAAGIQLSS EVFAKLDEEG KSEDAKRQEE 300
  301 EKKKSS

Type	Start	End	Confidence
Signal Peptide	1	15	0.62
N-region	1	6
H-region	7	12
C-region	13	15
Cleavage Site	15	16
Non-Cytoplasmic	16	306	0.99