YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC22A12.10
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLNRKQLKN LHNYKYSAID NSLLSKYILK PYWWNQLLKV IPMSMAPNLI TLIGLGFVVI  60
   61 NILTMLVYKY HYEMDAFPSW VYASWAIGLF LYQSFDAIDG SQARRTGTSS PLGQLFDHGV 120
  121 DAINTSFEVL LTIELLQLDM FSSILTQFAS LLYFYISTWE EYHTGTLYLS YFSGPVEGIV 180
  181 MVIGLFALTA IKGDSFWLKL HPTPESWGFV RSFLPYYTYG SCLYNFMAFA LLLNVLQSLR 240
  241 NALQAVQKNN GSVIKALSGI LPYFLQWMAV FSLYAKYPAF FEHHFLTIFC LNAFIFAYSV 300
  301 GVVIVSHITE SPFPYWNVLI LPFLVDAVDA YTFGVLKNVQ TEYFFCYVGI CIGVYGNFVA 360
  361 HVIAMITEEY GIKCLTIPSK PESKKN

Type	Start	End	Confidence
Cytoplasmic	1	45	0.75
Transmembrane Helix	46	68	0.87
Non-Cytoplasmic	69	75	0.64
Transmembrane Helix	76	95	0.71
Cytoplasmic	96	166	0.43
Transmembrane Helix	167	191	0.84
Non-Cytoplasmic	192	215	0.60
Transmembrane Helix	216	236	0.91
Cytoplasmic	237	252	0.58
Transmembrane Helix	253	275	0.83
Non-Cytoplasmic	276	283	0.54
Transmembrane Helix	284	306	0.91
Cytoplasmic	307	312	0.58
Transmembrane Helix	313	335	0.74
Non-Cytoplasmic	336	342	0.65
Transmembrane Helix	343	365	0.88
Cytoplasmic	366	386	0.71