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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: GDA1_SCHPO
Protein type: Transmembrane
Type Confidence: 0.74
Topology Confidence: 0.69
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPTMKSIAR RKALLIALSI FAVTFILWNG FPGSSNRPLP SSNDEFHYED IELPSGYRSE  60
   61 GEVVDLLNPK DELEEPLFSE EPLFPVTTSI PTKTAVSKPK IAPTSAAKDV TFSSSIDSDD 120
  121 CSVAYDNSKP VRQYVLMIDA GSTGSRVHVY QFNNCNPSPK LEEEFFKMIE PGLSSFAGDP 180
  181 EGAAASLDPL LDYAMENVPE EYRRCSPIAV KATAGLRLTG ESEAKAILKS VRQHLENDYP 240
  241 FPIVKDGVSI LEGSMEGIYA WITINYLLGT LGGKATHSTV AVMDLGGAST QLVFEPRFAS 300
  301 DGESLVDGDH KYVLDYNGEQ YELYQHSHLG YGLKEARKLI HKFVLNNAEA LKESLELLGD 360
  361 STSIIHPCLH LNASLTHPDS KSEASEVVFV GPSLAHLSLQ CRGIAEKALY KDKNCPVRPC 420
  421 SFNGVHQPKF TETFTDSPIY LISYFYDRMI SLGMPSTFTI EDMKYLANSV CSGPTYWQDA 480
  481 FSLTDALKEL KEEPEWCLDL NYMISLLSVG YEIPNNRQLH TAKKIDNKEL GWCLGASLSM 540
  541 LSEQNNGWNC NVKEEI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle