YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TVP18_SCHPO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFESIIVDRA KTTFLGELKS YNFSIYAQWL GILSIFLCII LGIVNLFHVT LVVLFSALTI  60
   61 IEGVLLIFIE LPFLSRICPV SDKFQAFTNA FASNYYRGLV YFIFSVVTFL SCIFMATSLI 120
  121 ATGIVLALTG LCYTFAGIKG QAFTSSSTLG GTGITTETPP STMV

Type	Start	End	Confidence
Cytoplasmic	1	24	0.80
Transmembrane Helix	25	44	0.92
Non-Cytoplasmic	45	50	0.51
Transmembrane Helix	51	74	0.83
Cytoplasmic	75	94	0.72
Transmembrane Helix	95	117	0.80
Non-Cytoplasmic	118	118	0.32
Transmembrane Helix	119	138	0.71
Cytoplasmic	139	164	0.58