YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBP23A10.06
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQIGAATEGV EADLSVNAEP DVKPIAKMLS ACVGSVITTL TVTPLDVVKT RLQSESISQY  60
   61 SSTQPISSAK ILGKGRPAPK PLGGPVSGLY QIARHEGVRS LWRGLVPSLT MLLPANTVQF 120
  121 LGYEQLLPLY SDWGFPAAAA IAGASARTIS ATIVSPIELF RTRVQAVGGH YPPGHAREIA 180
  181 NEVFDGLKLM IHQKGILNLW SGVSVTLWRD VPFSAFYWWS YERIRLFLLG HPSLQAFSSS 240
  241 QSTKDLYINF VSGGISGTLA TLLTQPFDVS KTAKQVHGHT LTRGQFMLTL WKRGGPKALW 300
  301 KGTLPRCVKV APSCAIMISS YHLTKKYFSE SVDAY

Type	Start	End	Confidence
Cytoplasmic	1	100	0.84
Transmembrane Helix	101	121	0.77
Non-Cytoplasmic	122	134	0.78
Transmembrane Helix	135	154	0.74
Cytoplasmic	155	335	0.54