YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YKP6_SCHPO
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNAQVLNLVA ALGVMQYSKK LDFTDPQIVY YARAAYVISN TIIFGVYAII QARINANNDE  60
   61 TPLVYEEPAP PFSGQSNGKL VTTTVKEYDS EQLQKAKRST MMGVAIMAFM HLYMGYAQPL 120
  121 VIQSILPLIS LFTNNLVSIY IFNKAAEGSL SRPFAPPAGL FGGGNKPAAA VTGTSSNSNN 180
  181 ASAKSDGPTI TELNENETEK SS

Type	Start	End	Confidence
Cytoplasmic	1	99	0.79
Transmembrane Helix	100	117	0.81
Non-Cytoplasmic	118	123	0.57
Transmembrane Helix	124	142	0.66
Cytoplasmic	143	202	0.65