YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC1604.04
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLAKQKDSQ EFAQPVWHYT LAGGISSVIC RFMIAPFDVI KIRMQITQSS LRPVFKETVQ  60
   61 KEGVRALWRG NVVAELLYLV YGAAEFVAFS KLKHLTENLA MNDHAVNFLC GTSAGIFATL 120
  121 TSYPLDTMRT KFASYAKTPH MLPATKKIYA EAGIKGFFPG LKFSVIQIGP YAGCFFMFYR 180
  181 ASEAVLSPLG LALSSTLSGV IAGAGSKAIM FPVDTVVKTL QTFPSNYKSF KDCFLSIYRN 240
  241 SGIKGLYRGL SVSMLKVAPG RYECLWLSCH FYYSIIYLLN SMFYLLTFYS LRAITMLIYE 300
  301 QTLQGLRTLS SPEA

Type	Start	End	Confidence
Non-Cytoplasmic	1	15	0.61
Transmembrane Helix	16	35	0.85
Cytoplasmic	36	71	0.62
Transmembrane Helix	72	89	0.48
Non-Cytoplasmic	90	103	0.42
Transmembrane Helix	104	125	0.72
Cytoplasmic	126	184	0.47
Transmembrane Helix	185	210	0.74
Non-Cytoplasmic	211	268	0.62
Transmembrane Helix	269	291	0.77
Cytoplasmic	292	314	0.61