YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC869.10c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	46	0.98
Transmembrane Helix	47	68	0.91
Non-Cytoplasmic	69	75	0.80
Transmembrane Helix	76	95	0.83
Cytoplasmic	96	127	0.67
Transmembrane Helix	128	147	0.77
Non-Cytoplasmic	148	155	0.65
Transmembrane Helix	156	175	0.94
Cytoplasmic	176	184	0.74
Transmembrane Helix	185	207	0.93
Non-Cytoplasmic	208	238	0.87
Transmembrane Helix	239	260	0.84
Cytoplasmic	261	278	0.81
Transmembrane Helix	279	299	0.92
Non-Cytoplasmic	300	334	0.79
Transmembrane Helix	335	356	0.83
Cytoplasmic	357	378	0.85
Transmembrane Helix	379	400	0.92
Non-Cytoplasmic	401	409	0.72
Transmembrane Helix	410	433	0.86
Cytoplasmic	434	454	0.91
Transmembrane Helix	455	477	0.89
Non-Cytoplasmic	478	485	0.71
Transmembrane Helix	486	506	0.91
Cytoplasmic	507	552	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEKKALQYE ESKRAEEITD IELVSVGGID VEKKYGETKR ALKSRHVQLI AIGGCIGTGL  60
   61 FVGSGSALSE SGPASLFLSY VIMSFVIWTV MNALGEMCTY LPLSGASPIT YIERYVDASL 120
  121 AFAAGWNYWY AYVFLVASEV TAASIVIEYW TYAVPTAGWI AILLFLVAVL NSFFVKWFGE 180
  181 TEFWFAIIKV IAIVGLIILG VVIFFGGTPK HDRLGFRYWK HGLAFREYIV KGASGRFVGF 240
  241 WSAVIKSGFA FILAPELVIF SAGETEAPRR NIPKATSRFI YRLIFFYIFG SLTIGVITSS 300
  301 KDPRLLNAIS SGASGAAASP FVIGIQNAEI PVLNHIINAV ILTSACSSGN SFLFAGSRSI 360
  361 YSLAKEHQAP KIFKYCNRWG VPVISVAVTV LFACLAFLNA SASAAVVFNW FCNLSTISGF 420
  421 LAWICVLVAY LQFRKAMILN NLWETRPYKT PFQPYATYLT LFLLALITLT NGFTVFVGHT 480
  481 FTAGNFIAAY ITLPIFLVLY VAHKLWSRNW SFGKRIEEID VTTGVAEAEA LEQMYPAPVP 540
  541 RNIIEKIWFW IA