YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC19F5.03
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.32
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVQFEANEKQ FKLRREDCCL TIDRESGAVS FEPDELKPVA RSKENSVTLF GSIKLKKDKY  60
   61 LILATEKSSA AQILGHKIYR VHKFEVIPYR NLLADDQDEL DLYNLLQNHL KTGPFYFSYT 120
  121 WDLTNSLQRS CTDEGKASPI LRSDKRFFWN EFASKDFIDL IGAHSEVSLF ITPMIYGFIT 180
  181 SASTIVKGRT ITLALISRRS KQRAGTRYFT RGLDENGNPA NFNETEQITI VSDEKSEVTY 240
  241 SHVQTRGSVP AFWAEVNNLR YKPLMVANSA SMAAAAAKKH FDEQISIYGD QVVVNLVNCK 300
  301 GHELPIKQLY ENVIRRLDNP HIHYHYFDFH KECSHMRWDR VSLLLNEIQP ELEEQGYTTL 360
  361 DTQKYRVLSR QNGVVRSNCM DCLDRTNVVQ SCIGRWVLTN QLRKCGIIGA THPLRSVIPL 420
  421 DNIFCNIWSD NADYISLSYS GTGALKTDFT RTGIRTRKGA FNDFVNSAKR YILNNFYDGA 480
  481 RQDAYDLVLG QFRPDVNFRY RLDLRPLTIR CVPYILLACL ILFFMTLFSR SSSTILPPSI 540
  541 LLILTFLGIV ASLYYCFAHG LQFINWPRLL LPSFLRSDMT PEGRVFVINR QLASKHKV

Type	Start	End	Confidence
Non-Cytoplasmic	1	173	0.74
Transmembrane Helix	174	191	0.32
Cytoplasmic	192	506	0.55
Transmembrane Helix	507	528	0.89
Non-Cytoplasmic	529	535	0.46
Transmembrane Helix	536	558	0.87
Cytoplasmic	559	598	0.54