YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPCPB1C11.02
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.64
Transmembrane Helix	21	44	0.85
Non-Cytoplasmic	45	49	0.52
Transmembrane Helix	50	71	0.86
Cytoplasmic	72	146	0.57
Transmembrane Helix	147	170	0.80
Non-Cytoplasmic	171	176	0.69
Transmembrane Helix	177	199	0.78
Cytoplasmic	200	265	0.61
Transmembrane Helix	266	283	0.91
Non-Cytoplasmic	284	304	0.78
Transmembrane Helix	305	331	0.74
Cytoplasmic	332	356	0.83
Transmembrane Helix	357	378	0.86
Non-Cytoplasmic	379	384	0.75
Transmembrane Helix	385	406	0.91
Cytoplasmic	407	424	0.89
Transmembrane Helix	425	445	0.93
Non-Cytoplasmic	446	455	0.77
Transmembrane Helix	456	476	0.90
Cytoplasmic	477	505	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDASVSLLPE GESLHRSLSA SQIQMLAFGG IIGTGLFLGI GSSLAESGPA SLLISFSVLG  60
   61 VSVYCTMLAL GEMSVYMPVA GSFCTYVGRY VDEALSFSLT WNYWLNDTIA LASHVLATRL 120
  121 VVDFWLIPTE GDPVSASLSL PPWKEAVRII TPITSLSANI ILNMLPVGGF GEIEYWLSSI 180
  181 KVFTVAAFIV NGILCNLGVN NEKKFIGFRY WKDPGAFNNG IIGVISSFVN AAFAYAGTES 240
  241 IALTAGEAKS PITTLPKAIR FTAHRVLLLY IISVLVVGIN LPYNTPGLDG DSVRMSPFTF 300
  301 VFKKFGVPGA ASIMNLVILS SALSAGNHSL YAGTRLLYSL AKSGHAPKVF SKCNKHGIPW 360
  361 LSVLATSATA ILCLMSSQAG KTWGFLLNVI AVSNQISWIF IAVSSLRFRK ALRVQGKTHR 420
  421 LYFPNWTYPV GPYIIILLNG VFLFLQGYKS LYPFRLSLFV SYYMEIPIVL GLYLIWKIYK 480
  481 KTKLVSSSEA DLETDWKSLE DTDSA