YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC13E7.11
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRLNFQSLL WKFGQKRFYY RPWIRIENIK PTPLWKPITF AVGVGSATFY TANYLDKRRK  60
   61 NYPKSSYGFP IPQTSSRSLV LSIIGINVGV FALWRAPRFS HLNRFLQKYA VMNPIFINMP 120
  121 SMIVSAFSHQ SGWHLLFNMV AFYSFAPAIV DVFGNNQFVA FYISSILFSN VASLLHHRLR 180
  181 FGTKVTPGSL GASGAIYAIA AATSYFFPNA SVSIIFLPFI PIKIGVALLG LMAFDAWGLI 240
  241 SRGFSSFANF TLIDHAAHLG GGIFGWLYAK YGYSTYNRST RPRPPSLSKP FFSRSVSF

Type	Start	End	Confidence
Cytoplasmic	1	32	0.84
Transmembrane Helix	33	52	0.81
Non-Cytoplasmic	53	74	0.85
Transmembrane Helix	75	96	0.88
Cytoplasmic	97	109	0.84
Transmembrane Helix	110	133	0.74
Non-Cytoplasmic	134	157	0.65
Transmembrane Helix	158	177	0.86
Cytoplasmic	178	184	0.76
Transmembrane Helix	185	207	0.85
Non-Cytoplasmic	208	213	0.72
Transmembrane Helix	214	239	0.81
Cytoplasmic	240	249	0.68
Transmembrane Helix	250	269	0.72
Non-Cytoplasmic	270	298	0.66