YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC19C2.15c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKILKIQYL KLYNVISCFL WMSVLLRTGL IWGITKDTAV VFHETNTLVR WVQTLAIAEV  60
   61 FHSIFGLVSS SPLTTIIQVA SRLYLVWGVC YPFSYVIEGS PIYLSMIIAW SITEIIRYAF 120
  121 YAFNLNGDIP AFLTWLRYNT FLILYPIGAG SEFLLVLKSR IAAQYVWSLN KLLWPILMSI 180
  181 YPPGLYIMYT HMLAQRRKIS KRAAARRT

Type	Start	End	Confidence
Cytoplasmic	1	11	0.86
Transmembrane Helix	12	31	0.92
Non-Cytoplasmic	32	54	0.76
Transmembrane Helix	55	77	0.67
Cytoplasmic	78	82	0.43
Transmembrane Helix	83	97	0.62
Non-Cytoplasmic	98	100	0.36
Transmembrane Helix	101	121	0.71
Cytoplasmic	122	134	0.45
Transmembrane Helix	135	157	0.68
Non-Cytoplasmic	158	171	0.69
Transmembrane Helix	172	193	0.89
Cytoplasmic	194	208	0.83