YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC691.01
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTNLEEKQR RFSKLQKTLG VVFPAAILLS TGYTVWVFIA LICVDSNIKI RNGYRNLGGG  60
   61 IVLIIFFFIT SGLAYFSYFR VLFSSPSFCG NTLYTYYGFD NPIFLCGPNG APRMCGTCKC 120
  121 WLPDRSHHSR VSMRCIRKFD HYCSFVGKDV CFSNQKFFYQ FLFYGFSAAC MVLISTAIMI 180
  181 SRTYHYRSLP GTWIFVLVFS AFGVLFLGVM LVRHTGYLLL NINSHEAKNW KTRIYSFSVF 240
  241 FPEHMDSRVL VQSDPGDLPW DRGYSENWRA VMGDHWYNWI LPLRRSPGDG EHFLYSPSFV 300
  301 SKMQSKALSM NS

Type	Start	End	Confidence
Cytoplasmic	1	19	0.83
Transmembrane Helix	20	42	0.92
Non-Cytoplasmic	43	56	0.80
Transmembrane Helix	57	79	0.90
Cytoplasmic	80	160	0.82
Transmembrane Helix	161	181	0.94
Non-Cytoplasmic	182	190	0.68
Transmembrane Helix	191	212	0.92
Cytoplasmic	213	312	0.83