YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPCC4B3.02c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWLSDLQKIG VGTTALGFLF MIMGIFMFFD GPLLSLGNLL LVFGFFMIAG FSKSVSFFLR  60
   61 KDRMLGSISF FSGLLLTLFH FPIIGFFVEC LGFFNLFKVF YPLIISFLRT VPYIGPYIDR 120
  121 LTSYQQSPV

Type	Start	End	Confidence
Cytoplasmic	1	8	0.94
Transmembrane Helix	9	29	0.94
Non-Cytoplasmic	30	35	0.76
Transmembrane Helix	36	57	0.89
Cytoplasmic	58	64	0.87
Transmembrane Helix	65	88	0.83
Non-Cytoplasmic	89	98	0.58
Transmembrane Helix	99	113	0.62
Cytoplasmic	114	129	0.55