YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YJ15_SCHPO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQNELNPILL SQNSIRFATR VAIFFIIRDE LVEAVTWRHP VKSMCLGLTI TLLYLHPVSF  60
   61 SAILLLVFLT MMPISMTHDV TTNLKDLQNF MASYSSSYDQ LLYFRQNYYH HITPSAISSG 120
  121 LLVSLVLIFL LAYLRISIDR YLPIAIWIGL ISLHPKLRSY LIQFYSAKRD HVPYLQIRNE 180
  181 LAQVWRHVDI SGSQTTTRYT SFPKFNPENS VTSLDLVEPP ENYSWAPQSD WTFVPPNEFR 240
  241 RFILWSPQPP KMNRKSSHGS NLPL

Type	Start	End	Confidence
Cytoplasmic	1	46	0.92
Transmembrane Helix	47	70	0.86
Non-Cytoplasmic	71	111	0.92
Transmembrane Helix	112	134	0.90
Cytoplasmic	135	264	0.68