YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBPB10D8.01
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	82	0.99
Transmembrane Helix	83	102	0.92
Non-Cytoplasmic	103	130	0.89
Transmembrane Helix	131	148	0.68
Cytoplasmic	149	155	0.55
Transmembrane Helix	156	187	0.71
Non-Cytoplasmic	188	215	0.69
Transmembrane Helix	216	236	0.94
Cytoplasmic	237	245	0.81
Transmembrane Helix	246	268	0.92
Non-Cytoplasmic	269	351	0.93
Transmembrane Helix	352	373	0.89
Cytoplasmic	374	383	0.79
Transmembrane Helix	384	403	0.95
Non-Cytoplasmic	404	409	0.86
Transmembrane Helix	410	432	0.91
Cytoplasmic	433	440	0.88
Transmembrane Helix	441	462	0.88
Non-Cytoplasmic	463	472	0.91
Transmembrane Helix	473	497	0.89
Cytoplasmic	498	552	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPQPSYADQI NVEDSSDYEK DPKEYVDKEK GYFPHVITSH ISKSSSQSHP DVSNAVLDET  60
   61 FSFMQEAKDL EPLTPKQDKR LRWKLYFTVL VMLMILDMML YIDKATLSYS SILGLFEDTH 120
  121 INSNQYNDIN TLFYVGFVIG QIPGHMLLQR FPVSKFVAAS TALWTIIIFL HCAAYNFSGL 180
  181 MALRFFLGLV ESSLLPTMEA TIGMFFPHSE QALLQPFFYI SCYGCNIPAG FIAYGVQYAK 240
  241 NTISPWKLFM IIVGGITFFL TIGLFFYYPD NTSTARFLTK KERLYTVDRV RRSNHSGIES 300
  301 KTFKKYQVIE ALKDPVTWLF TFHVFCNQLS NNLAYQQNLL FTSLNVSDLN STLVGVASAG 360
  361 YNCVSAIIAT YMMSVIKNQS AFHGAIWYIP SIAGGIACVA MSWDHKIGEL AAIIIASNFG 420
  421 IPFIISLGWT TASCAGYTKK LTRGVMFMIG YAIANIIGPQ MWQSRDAPRY YPAWIVQIVI 480
  481 AWSVSPFVLL IIRWILVRRN KKRLALLEQN KEQYEKTWIE TIDSSGNHVS GFYENSMLDL 540
  541 TDQENLSFIY PL