YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC359.01
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	83	0.98
Transmembrane Helix	84	104	0.92
Non-Cytoplasmic	105	110	0.85
Transmembrane Helix	111	135	0.83
Cytoplasmic	136	157	0.61
Transmembrane Helix	158	179	0.61
Non-Cytoplasmic	180	189	0.73
Transmembrane Helix	190	208	0.97
Cytoplasmic	209	219	0.72
Transmembrane Helix	220	241	0.90
Non-Cytoplasmic	242	265	0.87
Transmembrane Helix	266	288	0.84
Cytoplasmic	289	303	0.88
Transmembrane Helix	304	324	0.95
Non-Cytoplasmic	325	355	0.93
Transmembrane Helix	356	377	0.88
Cytoplasmic	378	398	0.92
Transmembrane Helix	399	418	0.96
Non-Cytoplasmic	419	435	0.91
Transmembrane Helix	436	458	0.91
Cytoplasmic	459	477	0.84
Transmembrane Helix	478	500	0.87
Non-Cytoplasmic	501	513	0.88
Transmembrane Helix	514	534	0.93
Cytoplasmic	535	581	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHSDYNFDI EQNAFEKEAP KVSIERKGDV VEEEVIATGE VENYAEPKSR NFLQRFFDDF  60
   61 KPALTTRGDG VALKRKLTSR HMQMISVGGA IGSGLYVGSG SAFADGGPAS VIINYILIGI 120
  121 MMIFVIYALG ELAIAYPVAG SFNTYATRFI DPAWGFAVSW NYFLNYFVTC PLELTTCAIT 180
  181 FKFWTEINSA AWISIFLAVV IVINLFGVRA YGEVEFILST IKVIATVGFI ILAIIINCGG 240
  241 VPTDHRGYIG GSIIKQKPFR HGFKGFCSVF TTAAFSFSGT EIIGLAAAEV GNPRKSVPSA 300
  301 VKQVFWRIAI FYVVSLILIG LLVSPDDPRL MGNGDVSVSP FVLAIQEANI KGLPSVFNAV 360
  361 IIISVVSVTN STTYTAARTL QGMATLKQAP KFFSYTDRVG RPLIAMVVVL LFGFFAYINE 420
  421 ADKNGSDISD TVFDWLLAIS GLSSFFTWGS ICLSHIMFRL AFKKQGHSLK ELGFVSPMGI 480
  481 WGSVIGLGFN ILCLMAEFYV SLFLIGGSPN ANDFFQGYLA ACIALAFFIG YKIYDRSHIP 540
  541 SLDKLDIDTG LKTYDNQDEE KEEYSSKGPL NILKKAWNAV C