YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YGW2_SCHPO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLLDSSIFR FRLSSLHVSS RSLGVYFAGI MFASAVWVFV DAALYSAFDY ARNLHITFID  60
   61 WIPFLCSILG IVIVNSIDKS RLSGDSFAYT DESLARKARF ILFIGFALLA GGLGGSFTVF 120
  121 ILKYVVAGYE GKSLLMGSAN IISNILFMIS ATALWITGNM NDDYHYNLQL

Type	Start	End	Confidence
Cytoplasmic	1	20	0.91
Transmembrane Helix	21	40	0.94
Non-Cytoplasmic	41	56	0.78
Transmembrane Helix	57	77	0.92
Cytoplasmic	78	99	0.90
Transmembrane Helix	100	122	0.93
Non-Cytoplasmic	123	134	0.82
Transmembrane Helix	135	158	0.86
Cytoplasmic	159	170	0.92