YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC9.10
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	82	0.95
Transmembrane Helix	83	104	0.69
Non-Cytoplasmic	105	112	0.58
Transmembrane Helix	113	146	0.76
Cytoplasmic	147	157	0.81
Transmembrane Helix	158	178	0.85
Non-Cytoplasmic	179	206	0.82
Transmembrane Helix	207	227	0.85
Cytoplasmic	228	233	0.82
Transmembrane Helix	234	257	0.79
Non-Cytoplasmic	258	306	0.79
Transmembrane Helix	307	325	0.76
Cytoplasmic	326	340	0.91
Transmembrane Helix	341	363	0.92
Non-Cytoplasmic	364	395	0.94
Transmembrane Helix	396	418	0.84
Cytoplasmic	419	449	0.87
Transmembrane Helix	450	470	0.94
Non-Cytoplasmic	471	476	0.74
Transmembrane Helix	477	497	0.93
Cytoplasmic	498	508	0.94
Transmembrane Helix	509	531	0.81
Non-Cytoplasmic	532	544	0.73
Transmembrane Helix	545	565	0.95
Cytoplasmic	566	591	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSSQISHQD PELGQTSSGS SSIKEKAEPQ LYAGPIDPAR RPDVFQEGFE DVSVTDDDND  60
   61 NELLRKMGYQ PVLHRSFEFF ESFAASFASL DVVSGVRLTF SWGISFGGPA AYWSAMLVTG 120
  121 FCSIVTAACL AEICSALPAA GSIYLWAAES AGPRFGRFVS FLVAWWSTTA WTTFVASITQ 180
  181 STANFIFAEV STFNNPWPTN DSDVKFRAVQ WIVAEVLLVF TILLNQVPPR YYKWIFKASM 240
  241 LLMFIDYVMN IIWVPVATSK KPDGFRSAKW VFTETIYDQA GYIKEVDDAN GNPIASLSKI 300
  301 VPKGWQWCLS YFATAGVIVG YDASGHIAEE TKDASIKAAR GIFYSTVTSF IVAFSLAILY 360
  361 LFCCPDLDTF TAILYNDNSP QPFVNFYSYL LGRGGHVVMN VVIILEIFLN GVVSVLACSR 420
  421 LVFAVSRDGV LPFSNWISQV SKTGQPKNAI TVIYIVSALL LCTILPSAVA FTSLVSAAGA 480
  481 PSFAAYAVLA FCRLFITRDK FPKGRWSLGW LSKPCLVITL VYNLFALVVN VSPYTYPVTG 540
  541 PSFNYAVVIM GGVSIFAIIC TIVIPKSRWV ANRYRYESDS EHSASVKELK V