YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	alg9
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.69
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	29	0.68
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	93	0.73
Transmembrane Helix	94	115	0.82
Cytoplasmic	116	123	0.57
Transmembrane Helix	124	146	0.73
Non-Cytoplasmic	147	176	0.63
Transmembrane Helix	177	199	0.87
Cytoplasmic	200	214	0.75
Transmembrane Helix	215	237	0.90
Non-Cytoplasmic	238	276	0.84
Transmembrane Helix	277	299	0.88
Cytoplasmic	300	306	0.67
Transmembrane Helix	307	327	0.91
Non-Cytoplasmic	328	335	0.72
Transmembrane Helix	336	358	0.87
Cytoplasmic	359	373	0.81
Transmembrane Helix	374	396	0.91
Non-Cytoplasmic	397	577	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSKAPRKSL SVSFVWTFSI LAVLRLTSAS FRVIDDCDEV YNYWEPLHYL LYGYGLQTWE  60
   61 YSPEYAIRSW FYIALHAVPG FLARGLGLSR LHVFYFIRGV LACFSAFCET NLILAVARNF 120
  121 NRAVALHLTS VLFVNSGMWS ASTSFLPSSF AMNMVTLALS AQLSPPSTKR TVKVVSFITI 180
  181 GAVIGWPFSA ALSIPFILLE LVDLKGRFRH LFCRWFKAIF VALLITGICI TVDSLFYHRI 240
  241 QFVAWNIVKY NVLAKDGRGP DIYGTEPWWY YFANLSLQHN IVLWFAMACG PLVLLAAFTN 300
  301 WINLDSFLDL SSVISPFYIW LFIFIIQPHK EERFMYPIYP VLCLAAAIGL DMSLKLMIQI 360
  361 LSSINETVRS KFPVRFVVLC VYAIIGCLSI ARILAIQNYN APMIIYPAIS FLETDNNVTT 420
  421 NVCVGKEWYR YPSTFFLPDN SRLKFVKSEF DGILPGEFVE SNSTWWNREG YYQIPEHMNE 480
  481 FNNEEPTRYT SLESCDFLID LEFDHSKATV NEPIYSKSDG WIPVMVYPFI DTKQTPFMGR 540
  541 AFAVPFIEPK WGRYEILVKK PVKIDFSNLR RASKQQA