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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SPAC3C7.01c
Protein type: Transmembrane
Type Confidence: 0.95
Topology Confidence: 0.55
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNQDVRVFPD SIYLSCSKKK ASLRIDRVDG CLSLSNSLDL SKTPDYNNVQ LYGFIRLKIY  60
   61 KYVVLVTSCD LHAAILGNNI YRARKFAIFP ITRTLPFSTG LLNIKDEEEL HYISLLNKHL 120
  121 SKGQILFSPT LDLTCSLQRL RVLTQSFELT SKYNYRFFWN KYAFHELIEL TNKDLGFQEW 180
  181 IQPMIQGNIA ITNSFLKTYN LRLCVITRHS PDYAGTRYFT RGVNAQGSAA NFNEIEQIIM 240
  241 IESPITLEEQ MVLSFTQIRG SIPMFWAEVN DLHYRPLLSL QPLDYSETVF GKHFQELAND 300
  301 YGDNLVVVNL LDQKGREAPL RSGFEKLCKR NKNPPLSYVY YDYHKQGSRN LPLFLAEIQS 360
  361 LLIEGKYYAE HGSKTTAMQT NFVRTNCMDC LDRTNVIQTS IAQFILNMQL HDIGVLSSSE 420
  421 SLEEYDSFLQ DFRLIWANTG DYISDLYTGT PALKGDVTRH GTRTIFGAFK DLLNCFRRYI 480
  481 LNNFFDGMLQ DSYDLGLGVF RPYDSLSIPD LPLRFHWTRF VAPGIFLFTT IILTIQELFG 540
  541 NPSLFCRLLY SIPMVNAGIY LYFHRRQYVN WPRLVLPTYA KGGWFSFRNH FRNITLKVFR 600
  601 FLRSGSFKKS V

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle