YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC11G7.01
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.95
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFTNNTSSV DTSLSSSASS SIPASSSSAA ASTSLSSSSV IPSSSSSMLS SSSATAISSS  60
   61 SSSSPLSSSS FTSPASSSFI TSLVSSSSQQ SSSSSASLTS SSSATLTSSS SASPTSSSSS 120
  121 HALSSSSSSL VASSSSSGMS SSSLSHSSSV PSSSSSYHSS SMTTSGLSSS ASIVSSTYRD 180
  181 GPSIITLVST SYVSEVVTPT TTNNWNSSSS FTSSTSSTPI SSSYSSSGTL PSKSNKSSNH 240
  241 VGVVVGCSVA IPVGVVLILI GLGIFLWKRH QRSKRIKAER MQEVEEYGFN PNQPSNFRSP 300
  301 NRAPSTNNRY RGWNGSPTPA AGNNTNGRPV APRPSAGAGG ANPPAASQPG LLGGSSNSAG 360
  361 PIAAATAAGV GADASDAANT GGSFTRPQGA RMVRPIGNPP DLSASNEAEA TMPPSNGSNF 420
  421 SEGLSASPFE SGPAVGAAGA AAEAAEHSGS GSDSYPEGPL ATIPESDSES MASDLAGESS 480
  481 YGSRAALSSR SQSNLLSPTS TGASNQPNYS PFADNPSSSN VSIPRSSSEA RRLNLF

Type	Start	End	Confidence
Signal Peptide	1	30	0.94
N-region	1	21
H-region	22	27
C-region	28	30
Cleavage Site	30	31
Non-Cytoplasmic	31	240	0.96
Transmembrane Helix	241	267	0.91
Cytoplasmic	268	536	0.94