YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC17A5.08
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.96
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVITLSGIT LFLLASLASA IELTFKLENQ EKQCYYLDSF HTGEKTHFTY AVQSGGSFDV  60
   61 DYMIKAPSQK TVALGKKRRQ ADVFFTLEEK GEYEFCFDNH MSTFTDKIVT MEITMENELS 120
  121 LPALTRDEAK DYKKDSMQST VLEISTALSE IDRVQNYFKT REHRNYSTVK STQARIFWFS 180
  181 LAESIMVVAL SALQVFIVKT FFKRSGRRGV

Type	Start	End	Confidence
Signal Peptide	1	20	0.99
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	175	0.99
Transmembrane Helix	176	198	0.88
Cytoplasmic	199	210	0.87