YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC9G1.08c
Protein type:	Transmembrane
Type Confidence:	0.84
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSLNSVLPS NACAEIIEGK DKVHNVVILM HGLGDSHKSF ANMAKNVPLP NTSYISLRGP  60
   61 YRLPLDFENP GGNWMWGEDV HFDQNGELQS EADFSKSFTM ISNLIGNLLS YGILSSRIFF 120
  121 FGFGQGAMVA LYSCYKLSTK YQLGGIFSFG GTLPLSITLP NHPFHVPVYL FEKRLHCSCS 180
  181 EYEESRLRKT FKPFHLTCWN RDDKTDMPSS PREWYTFVQS ISKHLYIHNT LFEDAIPLTS 240
  241 F

Type	Start	End	Confidence
Cytoplasmic	1	103	0.67
Transmembrane Helix	104	129	0.58
Non-Cytoplasmic	130	142	0.65
Transmembrane Helix	143	164	0.61
Cytoplasmic	165	241	0.60