YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC17H9.08
Protein type:	Transmembrane
Type Confidence:	0.83
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPNSTAQYPE KDSWEFLVKS GIAGGTAGCV AKSVVAPLDR VKILYQTNHA SYRGYAYSRH  60
   61 GLYKAIKHIY HVYGLHGLYQ GHTATLYRVF PYAGIKFVAY EQVRRVLIRD PEHETHARRF 120
  121 LSGSLAGTCS VFFTYPLELI RVRLAYITNT GKNPTLTQVT KDIFHERDFL CNKKYPGLSR 180
  181 LSKICNFYRG FSVTLTGIFP YAGMSFLAYD LATDFFHKQK IDEWVSTKKS DKKLKTWPEL 240
  241 LCGAFAGVCG QTVSYPFEVC RRKMQIGGIR KNKSFLRLKQ VVQTTYKEAG MRGFFVGLTI 300
  301 GYIKVIPMVS TSFFVYNHSK ALLGID

Type	Start	End	Confidence
Cytoplasmic	1	186	0.62
Transmembrane Helix	187	208	0.57
Non-Cytoplasmic	209	326	0.57