YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC11E3.13c
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.60
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNFLHFLTTS LLLLGGSRLA LADSASSAIK IKGNAFFNSD TNERFYVRGV DYQPGGSSTL  60
   61 VDPLADTSIC KRDLPYLQGL NINTIRVYQV DNSANHDECM SALQDAGIYV ILDLATSSNS 120
  121 ISRLDAASSY NAVFLQGIFA TIDAFKNYTN VLGFFAGNEV ANTAENSATT TWVKAALRDA 180
  181 KEYISKNSDR DIPVGYSAAD VAEIRVQCAD FFACGNSSVR ADFYGMNMYE WCGADSSFTI 240
  241 SGYDQRMEEF ANYSIPLFLS EYGCNDVTKE SDGTPDRPFD EVDAIFSSEM SSVFSGGLVY 300
  301 QYSEEGNNYG LVVIDGDNVT ISKNYETLKE KYASAANYTG DGDYSSSPAT LTCPADDSYF 360
  361 TSFPLPTMPS EAKGFIESGA GQPLGFNAPS NQEFSANATA LVSPGPHSVS TTINTNIVQA 420
  421 TISQSSTSGS SSGSSSASTT ASSSSVSSGS SISSGSSSMS TSYTSASGSS AHSSGSSSGS 480
  481 SSATSSASTF NLSRFYVFAG ILAISGLVFA

Type	Start	End	Confidence
Signal Peptide	1	22	0.99
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	489	0.99
Transmembrane Helix	490	509	0.54
Cytoplasmic	510	510	0.51