YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC5D6.04
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFFSSLGQI NVWSLLRPII ESDLEVIVIA LGGYVLAKKG FLPRDAQKVI SSLNVYFFTP  60
   61 CLVFEKVGNG LNLKMLIDLS LLPVFYVIIS AASILISFLL AKLFRLTPRQ RNFATACITF 120
  121 QNSNSLPLAL VSSLATTVKD LLWDKIPDDT PDKVASRGIM YLLIFSQLGQ ALRWSYGYRI 180
  181 LLSPNQPEDP LPIGNRSWSH SDVNEEEIQN LLASSANVDG VQNSVQANEG STVQTDSSAI 240
  241 SKNDNVQVET SNEEVGGFGA ASSKISKFIV LLLDFFSPPL YSLFIALFIA VVPPLQRFFF 300
  301 EEGSFVEGSI TSGIRMAGQV AVPMILVVLG ASLATDISKT EPTQEVRKNN DTRVIIVCLL 360
  361 GRMVVVPLAL LPAFSLLSYF SEISTVDDPV FVVVIFLLVG SPTAIQLTQI CQLNGVFERE 420
  421 CAKVLWWSYA VFTPPNSLLL AFASLLVVKW TK

Type	Start	End	Confidence
Non-Cytoplasmic	1	18	0.54
Transmembrane Helix	19	37	0.64
Cytoplasmic	38	48	0.59
Transmembrane Helix	49	68	0.58
Non-Cytoplasmic	69	81	0.80
Transmembrane Helix	82	104	0.89
Cytoplasmic	105	269	0.94
Transmembrane Helix	270	292	0.90
Non-Cytoplasmic	293	314	0.88
Transmembrane Helix	315	335	0.91
Cytoplasmic	336	353	0.90
Transmembrane Helix	354	376	0.89
Non-Cytoplasmic	377	389	0.81
Transmembrane Helix	390	410	0.86
Cytoplasmic	411	424	0.80
Transmembrane Helix	425	447	0.90
Non-Cytoplasmic	448	452	0.79