YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YDJ7_SCHPO
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNKRLTIQL PFYATQTASS SRFWRVLSPK SRTGIALYAS LILLCIFFTI FSTMSHPSLQ  60
   61 CFSPTSLVGA QPLKNLTHLI IVAGHAVWLG GSTNGEDDSE WILEPYQKGE GKVFAQHVRS 120
  121 GLDLLSQDDS SLLVFSGGQT RNGAGPSSEA QSYYSLSMQI NSDEGLAARR TTEEFARDSL 180
  181 ENVLFSVARF YEVTSRYPQK ITVVSFDFKR DRFLNLHRKA IKFPEHKFHF VGIDPEGGVS 240
  241 DATREAERKN AIIPFTEDPY ACSNPLLVKK RMERNPFRRQ HSYLITCPEL IPLLQYCPSD 300
  301 PSKFFNGKLP W

Type	Start	End	Confidence
Cytoplasmic	1	33	0.87
Transmembrane Helix	34	54	0.87
Non-Cytoplasmic	55	311	0.94