YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	str3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	80	0.99
Transmembrane Helix	81	100	0.96
Non-Cytoplasmic	101	120	0.84
Transmembrane Helix	121	141	0.88
Cytoplasmic	142	150	0.87
Transmembrane Helix	151	169	0.92
Non-Cytoplasmic	170	174	0.56
Transmembrane Helix	175	198	0.81
Cytoplasmic	199	208	0.77
Transmembrane Helix	209	233	0.83
Non-Cytoplasmic	234	239	0.87
Transmembrane Helix	240	262	0.91
Cytoplasmic	263	297	0.95
Transmembrane Helix	298	320	0.86
Non-Cytoplasmic	321	334	0.78
Transmembrane Helix	335	356	0.90
Cytoplasmic	357	369	0.81
Transmembrane Helix	370	390	0.85
Non-Cytoplasmic	391	408	0.85
Transmembrane Helix	409	432	0.83
Cytoplasmic	433	463	0.59
Transmembrane Helix	464	486	0.75
Non-Cytoplasmic	487	502	0.57
Transmembrane Helix	503	523	0.72
Cytoplasmic	524	573	0.88
Transmembrane Helix	574	595	0.92
Non-Cytoplasmic	596	630	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAKETHSIS DHEVELQDAK PEEKSENGNF VFEKAFSSDE EKGSGYNTNE TYSKMDNSLQ  60
   61 HRGVSKIEAV RDSIYQNKRG MYLAYAFGIA ILACSWASAI QSSTTYSYQV YATASFNRTS 120
  121 MISTLEIATA IISSVCKPIL GKFSDITSRP MTYTLVLLFY VIGFIVVASS STISAYVIGS 180
  181 VFISIGSSGL DYLNTLVVGD LTSLKWRGFM TALLSTPYIA TVWFTGFIVQ GIIDSNWRWG 240
  241 YGMFAIIMPA VMTPAVIILM YLERQANKDE NIKKIINYQT EEKNKNKQSK WQKLWKAVLE 300
  301 VDLFGLILLG VGWSILLLPF SLTSYAKNGW KNPSMIAMMV VGGVILIAYS GYEMFIAPYP 360
  361 SCPRRVMNRT FITAVIIDFF YYLAGYLQSM YFTTYTWILY DWSYRDWTYF NNTMTIALCV 420
  421 FGVFAGAMHR VFHRYKYLQI IGLVIKIVGY GILIRPNFAA TGKVDLAWSL ILIGMGGSFS 480
  481 VVGSQVSCQA SVPHQDLAIA SSLLPLYTNI GGAIGAAIAS PIFSNKVPKY LREYLPSSIN 540
  541 DTQVYNFYSD SSLIREYPVG TEIRDGAIKA YSRSMFFLLV PAVSLSFIPL AAAFWQSNFY 600
  601 LGNQQNAVEG DQDHKKKGDK ETTQEEKIII